PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07762.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 384aa    MW: 42599.1 Da    PI: 7.8975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07762.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.4e-11126149326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               e C+ f+r+G C++Gd C FaHg
  Rsa1.0_07762.1_g00001.1 126 GEVCPEFRRGGDCSRGDDCEFAHG 149
                              689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.4E-6123150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.4E-6123153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6127151IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8127149IPR000571Zinc finger, CCCH-type
SMARTSM003562.5159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDVVRPTVEI PPRKLLSSSK SFQAESSPRS SPRKHNWNNK INKISISEQE EDSFNEDNNN  60
NTTKDTKEYC YDSDTDDPYA SDHFRMFEFK IRRCTRSRSH DWTDCPFAHP GEKARRRDPR  120
RFQYSGEVCP EFRRGGDCSR GDDCEFAHGV FECWLHPIRY RTEACKDGKH CKRKVCFFAH  180
SPRQLRVLPP EGSSASASPG KNPCCLFCSS SPTSTLLGNL SHLSRSPSSS PPLSPANKAA  240
AFSRLRSCAA AGSINYKDVL SELVNSLDSI SLAEALQVSS FSPVSTPVSA AAAAFASSCG  300
LSNQRLHLQQ QQQQSSPLQF ALSPSTPSYL ASSPRSNFFS DDFTPRQRQM NDVTPHAAGR  360
DKTSSFEDGS CGDPDIGWVN DLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030271e-166AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAK1172191e-166AK117219.1 Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06.
GenBankBT0053421e-166BT005342.1 Arabidopsis thaliana At1g03790 mRNA, complete cds.
GenBankCP0026841e-166CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418203.10.0hypothetical protein EUTSA_v10007884mg
SwissprotQ9ZWA10.0C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLV4MW890.0V4MW89_EUTSA; Uncharacterized protein
STRINGBra015264.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-160C3H family protein